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对于SNP的基因型分析，该程序设计了引物旁侧突变，如SNPs、DIPs（/插入多态性）和MNPs（多核苷酸多态性）。
全面的分析支持
使用PrimerPlex为多重PCR、ASPE和直接杂交分析设计oligos。oligos被筛选为交叉反应性，以确保高信号强度，大限度地减少Tm失配。oligos筛选二聚体、运行和重复。
PrimerPlex
Features
Multiplex SNP Detection and High Throughput Genotyping
With PrimerPlex, you can design multiplex PCR primers flanking the SNP, ASPE primers with SNPs at the 3' end and capture probes with SNPs at their center. PrimerPlex enables you to detect all the mutations of a medium sized genomic sequence by designing oligos for each one of them. These primers and probes are checked for multiplexing and the best possible set is displayed.
"I used Beacon Designer for TaqMan assay design as well as designing probes from previously designed primers. I was able to navigate the program fairly easily so I would give high marks for ease of use. I also very much liked the interface with BLAST for potential regions of cross homology. Overall the program seemed to do a good job of providing template specific primers and probes." -Dr. Ryan Troyer, Colorado State University, United States.
"I have designed my primers using Primer Premier and the results are amazing" -Ms. Archana Adla, Auburn University, USA.
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