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Perform SNP analysis, Methylation analysis, or RNA A-to-G tolerant alignment in a few steps.
For example, with the click of a button you can convert 90 files, 45 pairs of forward and reverse sequences, into 45 contigs named according to your Patient IDs. A change in your sequence assembly parameters regroups your fragments, so you can assemble the contigs according to Clone ID, Date, Primer, or any other characteristic you record in your sequence names.
Sequence Trimming
Automated DNA sequencers occasionally produce poor quality reads, particularly near the sequencing primer site, and toward the end of longer sequence runs. The sequences of clones from DNA libraries frequently contain vector sequence, polyA tails, or other unrelated sequence. Introns and primer sequence frequently flank the sequence of amplified exons. Unless removed by trimming, any of these artifacts will distort your sequence assembly and downstream sequence analysis.
Support for Confidence Values
Sequencher displays confidence and summary confidence information (if available in your DNA sequence files) in the Project window, the Sequence Editor, and the Sequence Get Info window, so you can easily monitor the quality of your data.
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