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Gene Codes is committed to bringing you a wide variety of alignment and assembly algorithms developed and published in peer-reviewed journals, but making them accessible to non-engineers. For example, GSNAP (Tom Wu, Genentech, Inc.) is recognized as one of the best algorithms for correctly identifying splice junctions. A bioinformatics specialist might invoke the program like this:
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Assemble by Name is particularly helpful if you do a lot of sequencing and if you have numerous samples that are done with a standard set of sequencing primers. Some other applications of Assemble by Name can include:
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MUSCLE is a command line program, which means that normally you would be using this program through a Terminal application. Sequencher gives you access to MUSCLE’s power without the problems of learning to use the UNIX command line.
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With the addition of the Cufflinks suite you can perform RNA-Seq Differential Expression using the same style of interface we developed for all our NGS algorithms.
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