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Fixed aligned chromatogram base numbering bug which sometimes ignored gaps in the number calculation.
Vectors used in trimming project sequences are now saved in the project file.
Clipboard copy now works on aligned sequences.
Added FASTQ format copy option.
Added trim low quality option on opening of sequence files.
Added ‘Open Project’ menu item with it’s own most recent folder.
Graphics (restriction maps, graphs, etc.) can now be saved.
Files containing multiple sequences now open in a project by default.
The restriction map options box can be recalled if closed with a map still open.
Ctrl+mou*heel now zooms the chromatogram Y-axis.

Added a Deregister function for moving the license to a different computer.
Ctrl+up and Ctrl+down switch the cursor between the consensus and the alignment.
Fixed a bug which prevented clinking on the consensus when the alignment was scrolled down.
Fixed problems with splitting a contig printout across multiple pages.
Fixed a bug which skipped undo of paste operations.
The contig naming convention is now saved in the project file.
Added menu item to open the message log.

ChromasPro具体功能
打开Applied Biosystems .ab1, Staden Chromatogram (SCF and ZTR), 454 SFF, FASTA, FASTQ, EMBL, GenBank, SwissProt, GenPept, GCG RSF和纯文本格式中的序列。
以.ab1, .scf, .fasta 和.fastq格式保存序列。
使用图形界面组装重叠序列,生成一致性并**模糊性进行编辑。
使用高质量数据自动去除低质量序列以改进序列组装。
ChromasPro is suitable for DNA sequence assembly projects up to a few megabases, and basic sequence editing and analysis. It is able to assemble data from Sanger sequencers such as ABI, and 454 and Illumina next-generation sequencers, with up to 1,000,000 sequences if 8 Gb RAM is available. ChromasPro has the following features:

Open sequences in Applied Biosystems .ab1, Staden Chromatogram (SCF and ZTR), 454 SFF, FASTA, FASTQ, EMBL, GenBank, SwissProt, GenPept, GCG RSF and plain text formats.
Save sequences in .ab1, .scf, .fasta and .fastq formats.
Assemble overlapping sequences using a graphical interface, generate a consensus and highlight ambiguities for editing.
Use quality data to automatically remove low quality sequence for improved sequence assembly.
Use a reference sequence as a scaffold for assembly.
Generate restriction site and fragment maps, and list cutters, non-cutters and fragments.
Map open reading frames, aided by a G+C frame plot, and translate ORFs with one click.
Print chromatograms, restriction site and fragment maps, and open reading frame maps.
Perform nucleotide and protein BLAST searches through the NCBI web site.
Perform multiple alignments by interfacing with ClustalW.
Reverse & complement sequences and chromatograms.
Search for sequences by exact matching or optimal alignment.
Display translations when editing nucleotide sequences.
Perform reverse translations and plot nucleotide degeneracy.
Plot hydrophilicity and antigenicity of proteins.
Copy an image of a chromatogram section for pasting into documents or presentations.
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