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Your Connections Sessions are automatically saved with your project. With the new Session Launcher, it’s easy to create a new Session, add more data to existing Sessions, or simply review and re-run older Sessions to see if any new sequences of interest have been added to the databases you queried previously. Use the Schematic to provide a graphical overview of your BLAST, Local-BLAST, and Primer-BLAST analyses at the same time. The ability to have multiple Sessions open at the same time means you can view all your results with ease. When your results finally expire from NCBI’s website, you can be sure that they will still be there safe in Connections.
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Once the alignment is complete you will see the results as a contig or contigs within Sequencher which you can subject to a variety of analyses.
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Assemble by Name is particularly helpful if you do a lot of sequencing and if you have numerous samples that are done with a standard set of sequencing primers. Some other applications of Assemble by Name can include:
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Gene Codes is committed to bringing you a wide variety of alignment and assembly algorithms developed and published in peer-reviewed journals, but making them accessible to non-engineers. For example, GSNAP (Tom Wu, Genentech, Inc.) is recognized as one of the best algorithms for correctly identifying splice junctions. A bioinformatics specialist might invoke the program like this:
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