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The coloring of residues is done through a simple edit box (right). Three colors are available (presented in the left-hand column) Setup, and for each color you can have four different entries (max. 10 residues in each entry). Notice that the question mark can substitute for ‘any residue’ (do not use ‘X’ as this is recognized as a specific residue – unknown). If the ‘Highlight global’ check-box is checked, all currently open sequence windows will be colored. If the ‘Keep highlight’ is not checked, the entries will be cleared whenever the ‘Highlight residues’ dialog is accessed.
However, a number of other bioinformatics tools have been included, so the use of the program extends far beyond simple mass analysis.
fixed residue width,
sidebar with sequence information,
display disulfide bridges, modified residues etc.
is that the sequence saved from GPMAW may contain additional information, e.g. modified residues, cross-links, annotations etc. Note that GPMAW sequence libraries may contain multiple sequences.
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