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With the addition of the Cufflinks suite you can perform RNA-Seq Differential Expression using the same style of interface we developed for all our NGS algorithms.
When you are ready to do more with your expression data, then use CodeLinker, the latest member of the Gene Codes product line.
The end goal of RNA-Seq analyses for many is differential expression. The best tool is Cufflinks, a suite of peer-reviewed algorithms found in Sequencher.
With more than a decade of commercial availability behind them, microarrays are still a popular method of gene expression profiling despite the increasing popularity of RNA-Seq.
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